Organisms that are asexual, has the characteristic of they genes are inherited together, or linked, as they cannot mix with genes in other organisms during reproduction. However, the descendants of sexual organisms contain random mixtures of their parents' chromosomes that are produced through independent as sortment. In a related process knowing as homologous recombination, sexual organisms exchange DNA between two matching chromosomes.
Recombination and reassortment do not alter allele frequencies, but instead change which alleles are associated with each other, producing descendants with new combinations of alleles. Sex usually increases genetic variation and may increase the rate of evolution. However, asexuality is advantageous in some environments as it can evolve in previously-sexual animals. Here, asexuality might allow the two sets of alleles in their genome to diverge and gain different functions.
Recombination allows even alleles that are close together in a strand of DNA to be inherited independently. However, the rate of recombination is low (approximately two events per chromosome per generation). As a result, genes close together on a chromosome may not always be shuffled away from each other, and genes that are close together tend to be inherited
together, a phenomenon known as linkage. This tendency is measured by finding how often two alleles occur together on a single chromosome, which is called their linkage disequilibrium. A set of alleles that is usually inherited in a group is called a haplotype.
When alleles cannot be separated by recombination – such as in mammalian Y chromosomes, which pass intact from fathers to sons – harmful mutations accumulate. By breaking up allele combinations, sexual reproduction allows the removal of harmful mutations and the retention of beneficial mutations. In addition, recombination and reassortment can produce individuals with new and advantageous gene combinations.
These positive effects are balanced by the fact that sex reduces an organism's reproductive rate, can cause mutations and may separate beneficial combinations of genes.The reasons for the evolution of sexual reproduction are therefore unclear and this question is still an active area of research in evolutionary biology, that has prompted ideas such as the Red Queen hypothesis.
